Thanks for the suggestions. Unfortunately, I tried renaming the directories and it messed up the look of my Wordpress based site. Plus, I wasn't able to log in to Wordpress anymore. I then tried downloading from one domain and uploading to the new domain and had the same result as before.
I currently have domain redirect setup. I didn't want to try the mirror domain option because I don't want search engines to blacklist my site.
Any other suggestions would be greatly appreciated.