Sorry, I didn't mean to be accusatory. I was apologizing for not reporting what I saw as a bug with Safari.
I admit it's a very awkward sentence. Too many "it"s.
When I first FTP using Transmit, I see Maildir and other a few other folders that I created (trying out different sites etc.).
In my keeptherubbersidedown.com folder I see two other folders and nothing else, from an attempt to use Rails (which I had some use for, but that project has gone away, so I figured Joomla was more my speed.).
In other words the same thing I see with WebFTP.
Time to put in a support ticket or empty the keeptherubbersidedown.com and start over. The FAQ mentioned starting with an empty folder. Of course, I didn't see that caveat until after I already did it.
Thanks for responding. And thanks for asking for clarification on my poor wording rather than going off or giving up.