You might need to modify your Filezilla configuration.
""Always show hidden files
Some servers don't show hidden files like dotfiles (filenames starting with a dot) by default. Enable Always show hidden files if you want to see those file. However, not all servers support these feature, they may return an error or may return broken or incomplete directory listings. So be careful when enabling this feature.""
Hope that works. In my FTP client, I get to specify the actually parameters instead of a simple checkbox, so can't be sure if this is the same thing.
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