Ok, it’s a minor gripe, but on the offchance somebody else has had this…
In trying to get things set up Just How I Like Them, I changed the default /home/user/site.domain location for my site to /home/user/www/site-domain. Created the directory, can serve from it no problem.
But some process keeps making the empty directory /home/user/site.domain all over again! This is warfare now - I’m going to monitor when the damn thing gets created, and set up a cron job at just the right time of the hour to unlink the critter.
Is there a better way?